Current awareness on comparative and functional Genomics.

1 Reviews & symposia

2005. Special issue: DNA microarrays and expression profiling in drug abuse research. Addict Biol 10: (1)

2005. Special issue: Functional genomics of ageing II. Mech Ageing Dev 126: (1)

2005. Special issue: Proteomics databases part III. J Chromatogr B 815: (1-2)

2005. Special issue: The Molecular Biology Database Collection: 2005 update. Nucleic Acids Res 33: (Database issue)

Armstrong NJ, Van de Wiel MA. 2004. Microarray data analysis: From hypotheses to conclusions using gene expression data (Review). Cell Oncol 26: (5-6) 279.

Bentley SD, Parkhill J. 2004. Comparative genomic structure of prokaryotes. Annu Rev Genet 38: 771.

Berriman M. 2004. The genomes of eukaryotic pathogens. S Afr J Sci 100: (9-10) 452.

Bolonna AA, Arranz MJ, Mancama D, Kerwin RW. 2004. Pharmacogenomics--Can genetics help in the care of psychiatric patients? Int Rev Psychiatry 16: (4) 311.

Brandt R, Grutzmann R, Bauer A, Jesnowski R, Ringel J, Lohr M, Pilarsky C, Hoheisel JD. 2004. DNA microarray analysis of pancreatic malignancies (Review). Pancreatology 4: (6) 587.

Callanan M. 2005. Mining the probiotic genome: Advanced strategies, enhanced benefits, perceived obstacles. Curr Pharm Design 11: (1) 25.

Duncan MJ. 2003. Genomics of oral bacteria. Crit Rev Oral Biol Med 14: (3) 175.

Ephritikhine G, Ferro M, Rolland N. 2004. Plant membrane proteomics. Plant Physiol Biochem 42: (12) 943.

Ferrando AA, Look AT. 2004. DNA microarrays in the diagnosis and management of acute lymphoblastic leukemia. Int J Hematol 80: (5) 395.

Grossman AR. 2005. Paths toward algal genomics. Plant Physiol 137: (2) 410.

Gunsalus KC, Piano F. 2005. RNAi as a tool to study cell biology: Building genome-phenome bridge. Curr Opin Cell Biol 17: (1) 3.

Hirschhorn JN, Daly MJ. 2005. Genome-wide association studies for common diseases and complex traits. Nat Rev Genet 6: (2) 95.

Hughes S, Arneson N, Done S, Squire J. 2005. The use of whole genome amplification in the study of human disease (Review). Prog Biophys Mol Biol 88: (1) 173.

Kelley J, Walter L, Trowsdale J. 2005. Comparative genomics of major histocompatibility complexes (Review). Immunogenetics 56: (10) 683.

Khabar KSA. 2005. The AU-rich transcriptome: More than interferons and cytokines, and its role in disease (Review). J Interferon Cytokine Res 25: (1) 1.

Kralj M, Kraljevic S, Sedic M, Kurjak A, Pavelic K. 2005. Global approach to perinatal medicine: Functional genomics and proteomics (Review). J Perinat Med 33: (1) 5.

Lange BM, Ghassemian M. 2005. Comprehensive post-genomic data analysis approaches integrating biochemical pathway maps (Review). Phytochemistry 66: (4) 413.

Lee SJ, Saravanan RS, Damasceno CMB, Yamane H, Kim BD, Rose JKC. 2004. Digging deeper into the plant cell wall proteome. Plant Physiol Biochem 42: (12) 979.

Liu ET. 2004. Expression genomics and cancer drug development. Drug Dev Res 62: (4) 295.

Lundstrom K. 2005. Structural genomics of GPCRs (Review). Trends Biotechnol 23: (2) 103.

Millar AH, Heazlewood JL, Kristensen BK, Braun HP, Moller IM. 2005. The plant mitochondrial proteome (Review). Trends Plant Sci 10: (1) 36.

Mockler TC, Ecker JR. 2005. Applications of DNA tiling arrays for whole-genome analysis (Review). Genomics 85: (1) 1.

Posadas EM, Simpkins F, Liotta LA, MacDonald C, Kohn EC. 2005. Proteomic analysis for the early detection and rational treatment of cancer-Realistic hope? (Review). Ann Oncol 16: (1) 16.

Renesto P, Ogata H, Audic S, Claverie JM, Raoult D. 2005. Some lessons from Rickettsia genomics. FEMS Microbiol Rev 29: (1) 99.

Resing KA, Ahn NG. 2005. Proteomics strategies for protein identification (Review). FEBS Lett 579: (4) 885.

Righetti PG, Castagna A, Antonioli P, Boschetti E. 2005. Prefractionation techniques in proteome analysis: The mining tools of the third millennium (Review). Electrophoresis 26: (2) 297.

Scarselli M, Giuliani MM, Adu-Bobie J, Pizza M, Rappuoli R. 2005. The impact of genomics on vaccine design (Review). Trends Biotechnol 23: (2) 84.

Schwacke R, Flugge UI, Kunze R. 2004. Plant membrane proteome databases. Plant Physiol Biochem 42: (12) 1023.

Shih W, Chetty R, Tsao MS. 2005. Expression profiling by microarrays in colorectal cancer (Review). Oncol Rep 13: (3) 517.

Stauber EJ, Hippler M. 2004. Chlamydomonas reinhardtii proteomics. Plant Physiol Biochem 42: (12) 989.

Tittiger C. 2004. Functional genomics and insect chemical ecology (Review). J Chem Ecol 30: (12) 2335.

Van Wijk KJ. 2004. Plastid proteomics. Plant Physiol Biochem 42: (12) 963.

Vanhecke D, Janitz M. 2005. Functional genomics using high-throughput RNA interference. Drug Discov Today 10: (3) 205.

Wang WYS, Barratt BJ, Clayton DG, Todd JA. 2005. Genome-wide association studies: Theoretical and practical concerns. Nat Rev Genet 6: (2) 109.

Wetmore BA, Merrick BA. 2004. Toxicoproteomics: Proteomics applied to toxicology and pathology. Toxicol Pathol 32: (6) 619.

3 Large-scale sequencing and mapping

Brayton KA, Kappmeyer LS, Herndon DR, Dark MJ, Tibbals DL, Palmer GH, McGuire TC, Knowles DP. 2005. Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins. Proc Natl Acad Sci U S A 102: (3) 844.

Karaoglu H, Lee CMY, Meyer W. 2005. Survey of simple sequence repeats in completed fungal genomes. Mol Biol Evol 22: (3) 639.

Larsson P, Oyston PCF, Chain P, Chu MC, Duffield M, Fuxelius HH, Garcia E, Halltorp G, Johansson D, Isherwood KE et al. 2005. The complete genome sequence of Francisella tularensis, the causative agent of tularemia. Nat Genet 37: (2) 153.

Loftus B, Anderson I, Davies R, Alsmark UCM, Samuelson J, Amedeo P, Roncaglia P, Berriman M, Hirt RP, Mann BJ et al. 2005. The genome of the protist parasite Entamoeba histolytica. Nature 433: (7028) 865.

Parma P, Erra-Pujada M, Feligini M, Greppi G, Enne G. 2004. Water buffalo (Bubalus bubalis): Complete nucleotide mitochondrial genome sequence. DNA Seq 15: (5-6) 369.

Prust C, Hoffmeister M, Liesegang H, Wiezer A, Fricke WF, Ehrenreich A, Gottschalk G, Deppenmeier U. 2005. Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans. Nat Biotechnol 23: (2) 195.

Seo JS, Chong HY, Park HS, Yoon KO, Jung C, Kim JJ, Hong JH, Kim H, Kim JH, Kil JI et al. 2005. The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4. Nat Biotechnol 23: (1) 63.

Talla E, Anthouard V, Bouchier C, Frangeul L, Dujon B. 2005. The complete mitochondrial genome of the yeast Kluyveromyces thermotolerans. FEBS Lett 579: (1) 30.

Van Pittius NCG, Sampson SL, Warren RM, Van Helden PD. 2004. Genome variation in Mycobacterium tuberculosis. S Afr J Sci 100: (9-10) 465.

4 Evolutionary genomics

Liu MY, Walch H, Wu SP, Grigoriev A. 2005. Significant expansion of exon-bordering protein domains during animal proteome evolution. Nucleic Acids Res 33: (1) 95.

Wicker T, Robertson JS, Schulze SR, Feltus FA, Magrini V, Morrison JA, Mardis ER, Wilson RK, Peterson DG, Paterson AH et al. 2005. The repetitive landscape of the chicken genome. Genome Res 15: (1) 126.

5 Comparative genomics

Barbier G, Oesterhelt C, Larson MD, Halgren RG, Wilkerson C, Garavito RM, Benning C, Weber APM. 2005. Comparative genomics of two closely related unicellular thermo-acidophilic red algae, Galdieria sulphuraria and Cyanidioschyzon merolae, reveals the molecular basis of the metabolic flexibility of Galdieria sulphuraria and significant differences in carbohydrate metabolism of both algae. Plant Physiol 137: (2) 460.

Bourque G, Zdobnov EM, Bork P, Pevzner PA, Tesler G. 2005. Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages. Genome Res 15: (1) 98.

Cassat J, Dunman P, McAleese F, Murphy E, Projan S, Smeltzer M. 2005. Comparative genomics of Staphylococcus aureus musculoskeletal isolates. J Bacteriol 187: (2) 576.

Erill I, Jara M, Salvador N, Escribano M, Campoy S, Barbe J. 2004. Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics. Nucleic Acids Res 32: (22) 6617.

Faraut T. 2005. Comparative mapping of genomes (French). Biofutur (251) 37.

Li HY, Pellegrini M, Eisenberg D. 2005. Detection of parallel functional modules by comparative analysis of genome sequences. Nat Biotechnol 23: (2) 253.

Lombardot T, Bauer M, Teeling H, Amann R, Glockner FO. 2005. The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH [1.sup.T] as revealed by whole genome comparisons. FEMS Microbiol Lett 242: (1) 137.

Montsant A, Jabbari K, Maheswari U, Bowler C. 2005. Comparative genomics of the pennate diatom Phaeodactylum tricornutum. Plant Physiol 137: (2) 500.

Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP et al. 2005. Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution. Genome Res 15: (1) 1.

Tyler SD, Peters GA, Severini A. 2005. Complete genome sequence…